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C
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D
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A
args_to_repos() (in module ephemeris.shed_tools)
C
check_galaxy_version() (in module ephemeris.get_tool_list_from_galaxy)
check_url() (in module ephemeris)
create_batch_api() (in module ephemeris.setup_data_libraries)
create_legacy() (in module ephemeris.setup_data_libraries)
D
data_table_entry_exists() (ephemeris.run_data_managers.DataManagers method)
DataManagers (class in ephemeris.run_data_managers)
disable_external_library_logging() (in module ephemeris.ephemeris_log)
dm_is_fetcher() (ephemeris.run_data_managers.DataManagers method)
dump_to_yaml_file() (in module ephemeris)
E
emit() (ephemeris.ephemeris_log.ProgressConsoleHandler method)
ephemeris (module)
ephemeris.common_parser (module)
ephemeris.ephemeris_log (module)
ephemeris.generate_tool_list_from_ga_workflow_files (module)
,
[1]
ephemeris.get_tool_list_from_galaxy (module)
,
[1]
ephemeris.run_data_managers (module)
,
[1]
ephemeris.setup_data_libraries (module)
,
[1]
ephemeris.shed_tools (module)
,
[1]
ephemeris.sleep (module)
,
[1]
ephemeris.workflow_install (module)
,
[1]
F
filter_installed_repos() (ephemeris.shed_tools.InstallRepositoryManager method)
filter_section_name_or_id_or_changeset() (ephemeris.get_tool_list_from_galaxy.GiToToolYaml method)
G
galaxy_wait() (in module ephemeris.sleep)
generate_tool_list_from_workflow() (in module ephemeris.generate_tool_list_from_ga_workflow_files)
get_common_args() (in module ephemeris.common_parser)
get_dm_jobs() (ephemeris.run_data_managers.DataManagers method)
get_first_valid_entry() (in module ephemeris.run_data_managers)
get_galaxy_connection() (in module ephemeris)
get_repo_from_tool() (in module ephemeris.get_tool_list_from_galaxy)
get_tool_panel() (in module ephemeris.get_tool_list_from_galaxy)
get_workflow_dictionary() (in module ephemeris.generate_tool_list_from_ga_workflow_files)
GiToToolYaml (class in ephemeris.get_tool_list_from_galaxy)
I
import_workflow() (in module ephemeris.workflow_install)
initiate_job_lists() (ephemeris.run_data_managers.DataManagers method)
input_entries_exist_in_data_tables() (ephemeris.run_data_managers.DataManagers method)
install_repositories() (ephemeris.shed_tools.InstallRepositoryManager method)
install_repository_revision() (ephemeris.shed_tools.InstallRepositoryManager method)
installed_repositories() (ephemeris.shed_tools.InstallRepositoryManager method)
installed_tool_list (ephemeris.get_tool_list_from_galaxy.GiToToolYaml attribute)
InstallRepositoryManager (class in ephemeris.shed_tools)
L
load_yaml_file() (in module ephemeris)
log_repository_install_error() (in module ephemeris.shed_tools)
log_repository_install_skip() (in module ephemeris.shed_tools)
log_repository_install_start() (in module ephemeris.shed_tools)
log_repository_install_success() (in module ephemeris.shed_tools)
M
main() (in module ephemeris.generate_tool_list_from_ga_workflow_files)
(in module ephemeris.get_tool_list_from_galaxy)
(in module ephemeris.run_data_managers)
(in module ephemeris.setup_data_libraries)
(in module ephemeris.shed_tools)
(in module ephemeris.sleep)
(in module ephemeris.workflow_install)
merge_repository_changeset_revisions() (in module ephemeris.get_tool_list_from_galaxy)
O
on_same_line (ephemeris.ephemeris_log.ProgressConsoleHandler attribute)
P
parse_items() (ephemeris.run_data_managers.DataManagers method)
print_yaml_tool_list() (in module ephemeris.generate_tool_list_from_ga_workflow_files)
ProgressConsoleHandler (class in ephemeris.ephemeris_log)
R
reduce_tool_list() (in module ephemeris.generate_tool_list_from_ga_workflow_files)
repository_list (ephemeris.get_tool_list_from_galaxy.GiToToolYaml attribute)
run() (ephemeris.run_data_managers.DataManagers method)
S
setup_data_libraries() (in module ephemeris.setup_data_libraries)
setup_global_logger() (in module ephemeris.ephemeris_log)
T
test_tools() (ephemeris.shed_tools.InstallRepositoryManager method)
the_same_repository() (in module ephemeris.get_tool_list_from_galaxy)
tool_list (ephemeris.get_tool_list_from_galaxy.GiToToolYaml attribute)
toolbox (ephemeris.get_tool_list_from_galaxy.GiToToolYaml attribute)
tools_for_repository() (in module ephemeris.get_tool_list_from_galaxy)
translate_workflow_dictionary_to_tool_list() (in module ephemeris.generate_tool_list_from_ga_workflow_files)
U
update_repositories() (ephemeris.shed_tools.InstallRepositoryManager method)
W
wait() (in module ephemeris.run_data_managers)
wait_for_install() (ephemeris.shed_tools.InstallRepositoryManager method)
walk_tools() (in module ephemeris.get_tool_list_from_galaxy)
write_to_yaml() (ephemeris.get_tool_list_from_galaxy.GiToToolYaml method)
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