Get-tool-list¶

Tool to extract a tool list from galaxy.

Usage¶

usage: get-tool-list [-h] [-v] [-g GALAXY] [-u USER] [-p PASSWORD]
                     [-a API_KEY] -o OUTPUT [--include_tool_panel_id]
                     [--skip_tool_panel_name] [--skip_changeset_revision]
                     [--get_data_managers] [--get_all_tools]

Named Arguments¶

`-o, --output-file`
	tool_list.yml output file
`--include_tool_panel_id`
	Include tool_panel_id in tool_list.yml ? Use this only if the tool panel id already exists. See https://github.com/galaxyproject/ansible-galaxy-tools/blob/master/files/tool_list.yaml.sample Default: False
`--skip_tool_panel_name`
	Do not include tool_panel_name in tool_list.yml ? Default: False
`--skip_changeset_revision`
	Do not include the changeset revision when generating the tool list.Use this if you would like to use the list to update all the tools inyour galaxy instance using shed-install. Default: False
`--get_data_managers`
	Include the data managers in the tool list. Requires admin login details Default: False
`--get_all_tools`
	Get all tools and revisions, not just those which are present on the web ui.Requires login details. Default: False

General options¶

-v, --verbose

Increase output verbosity.

Default: False

Galaxy connection¶

`-g, --galaxy`	Target Galaxy instance URL/IP address Default: “http://localhost:8080”
`-u, --user`	Galaxy user name
`-p, --password`	Password for the Galaxy user
`-a, --api_key`	Galaxy admin user API key (required if not defined in the tools list file)