Ephemeris
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C
check_galaxy_version() (in module ephemeris.get_tool_list_from_galaxy)
create_tool_install_payload() (ephemeris.shed_install.InstallToolManager method)
D
data_table_entry_exists() (in module ephemeris.run_data_managers)
dump_to_yaml_file() (in module ephemeris.shed_install)
E
emit() (ephemeris.shed_install.ProgressConsoleHandler method)
ephemeris (module)
ephemeris.common_parser (module)
ephemeris.generate_tool_list_from_ga_workflow_files (module)
,
[1]
ephemeris.get_tool_list_from_galaxy (module)
,
[1]
ephemeris.run_data_managers (module)
,
[1]
ephemeris.setup_data_libraries (module)
,
[1]
ephemeris.shed_install (module)
,
[1]
ephemeris.sleep (module)
,
[1]
ephemeris.workflow_install (module)
,
[1]
F
filter_section_name_or_id_or_changeset() (ephemeris.get_tool_list_from_galaxy.GiToToolYaml method)
G
galaxy_instance() (in module ephemeris.shed_install)
generate_tool_list_from_workflow() (in module ephemeris.generate_tool_list_from_ga_workflow_files)
get_changeset_revision() (ephemeris.shed_install.InstallToolManager method)
get_common_args() (in module ephemeris.common_parser)
get_galaxy_connection() (in module ephemeris)
get_install_tool_manager() (in module ephemeris.shed_install)
get_name_from_inputs() (in module ephemeris.run_data_managers)
get_repo_from_tool() (ephemeris.get_tool_list_from_galaxy.GiToToolYaml method)
get_repos_from_section() (ephemeris.get_tool_list_from_galaxy.GiToToolYaml method)
get_repositories() (ephemeris.get_tool_list_from_galaxy.GiToToolYaml method)
get_value_from_inputs() (in module ephemeris.run_data_managers)
get_workflow_dictionary() (in module ephemeris.generate_tool_list_from_ga_workflow_files)
GiToToolYaml (class in ephemeris.get_tool_list_from_galaxy)
I
import_workflow() (in module ephemeris.workflow_install)
input_entries_exist_in_data_tables() (in module ephemeris.run_data_managers)
install_repository_revision() (in module ephemeris.shed_install)
install_tools() (ephemeris.shed_install.InstallToolManager method)
installed_tool_revisions() (in module ephemeris.shed_install)
installed_tools() (in module ephemeris.shed_install)
InstallToolManager (class in ephemeris.shed_install)
L
load_input_file() (in module ephemeris.shed_install)
log_tool_install_error() (in module ephemeris.shed_install)
log_tool_install_success() (in module ephemeris.shed_install)
M
main() (in module ephemeris.generate_tool_list_from_ga_workflow_files)
(in module ephemeris.get_tool_list_from_galaxy)
(in module ephemeris.run_data_managers)
(in module ephemeris.setup_data_libraries)
(in module ephemeris.sleep)
(in module ephemeris.workflow_install)
merge_tool_changeset_revisions() (ephemeris.get_tool_list_from_galaxy.GiToToolYaml method)
O
on_same_line (ephemeris.shed_install.ProgressConsoleHandler attribute)
P
parse_items() (in module ephemeris.run_data_managers)
print_yaml_tool_list() (in module ephemeris.generate_tool_list_from_ga_workflow_files)
ProgressConsoleHandler (class in ephemeris.shed_install)
R
reduce_tool_list() (in module ephemeris.generate_tool_list_from_ga_workflow_files)
run_data_managers() (in module ephemeris.shed_install)
run_dm() (in module ephemeris.run_data_managers)
S
script_main() (in module ephemeris.shed_install)
setup_data_libraries() (in module ephemeris.setup_data_libraries)
setup_global_logger() (in module ephemeris.shed_install)
T
the_same_tool() (in module ephemeris.shed_install)
tool_shed_client() (in module ephemeris.shed_install)
toolbox (ephemeris.get_tool_list_from_galaxy.GiToToolYaml attribute)
translate_workflow_dictionary_to_tool_list() (in module ephemeris.generate_tool_list_from_ga_workflow_files)
W
wait() (in module ephemeris.run_data_managers)
wait_for_install() (in module ephemeris.shed_install)
write_to_yaml() (ephemeris.get_tool_list_from_galaxy.GiToToolYaml method)
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