#!/usr/bin/env python
import argparse
[docs]def get_common_args(login_required=True, log_file=False):
parser = argparse.ArgumentParser(add_help=False)
general_group = parser.add_argument_group('General options')
general_group.add_argument("-v", "--verbose", help="Increase output verbosity.", action="store_true")
if log_file:
general_group.add_argument("--log_file",
dest="log_file",
help="Where the log file should be stored. "
"Default is a file in your system's temp folder",
default=None)
con_group = parser.add_argument_group('Galaxy connection')
con_group.add_argument("-g", "--galaxy",
help="Target Galaxy instance URL/IP address",
default="http://localhost:8080")
if login_required:
con_group.add_argument("-u", "--user",
help="Galaxy user name")
con_group.add_argument("-p", "--password",
help="Password for the Galaxy user")
con_group.add_argument("-a", "--api_key",
dest="api_key",
help="Galaxy admin user API key (required if not defined in the tools list file)")
return parser